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Genome survey report of Thai ricefish (Oryzias minutillus)(Actinopterygii: Beloniformes) |
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| รหัสดีโอไอ | |
| Creator | 1. Arin Ngamniyom 2. Kun Silprasit |
| Title | Genome survey report of Thai ricefish (Oryzias minutillus)(Actinopterygii: Beloniformes) |
| Publisher | Research and Development Office, Prince of Songkla University |
| Publication Year | 2565 |
| Journal Title | Songklanakarin Journal of Science an Technology (SJST) |
| Journal Vol. | 44 |
| Journal No. | 4 |
| Page no. | 1153-1158 |
| Keyword | Thai medaka, northwestern Thailand, genome size, mitogenome |
| URL Website | https://rdo.psu.ac.th/sjst/index.php |
| ISSN | 0125-3395 |
| Abstract | Thai ricefish (Oryzias minutillus) is the smallest species in the Oryzias genus, widely distributed throughout Thailand.They are important in the trophic level of food webs within freshwater ecosystems. However, knowledge about the moleculardata of this fish is lacking. Therefore, in this study, we surveyed the genome data of Thai ricefish collected from Mae Hong SonProvince, Northwestern Thailand. In the initial assembly, the total genome and mitochondrial genome of Thai ricefish were 824Mb and 16,954 bp, respectively. The total sizes of contig and scaffold were 547.7 and 585.9 Mb, respectively. The total genomesize per mitochondrial size was 0.049. Phylogenetic relationship of Thai ricefish and related species of Oryzias was constructedbased on mitochondrial genome. The nucleotide similarity of all genes in the mitogenome of Thai ricefish was compared with therelated species of Oryzias from nucleotide database of the National Center for Biotechnology Information. The results providedata that increase knowledge of molecular genetics and a basis for further work on fish in genus Oryzias. |
